| Name | Version | Summary | date |
| TTNe |
0.0.1a0 |
A python package for inference recent population size trajectories using time-series IBD data |
2024-04-19 06:34:20 |
| Timesweeper |
1.4.1 |
A tool for detecting positive selective sweeps using time-series genomcis data. |
2024-03-28 21:18:55 |
| tstrait |
0.1.0 |
Quantitative trait simulation of tree sequence data |
2024-03-11 14:20:09 |
| msprime |
1.3.1 |
Simulate genealogical trees and genomic sequence data using population genetic models |
2024-02-09 13:05:56 |
| tsdate |
0.1.6 |
Infer node ages from a tree sequence topology. |
2024-01-06 23:12:00 |
| tskit-arg-visualizer |
0.0.1 |
Interactive visualization method for ancestral recombination graphs |
2023-11-03 23:17:21 |
| tskit |
0.5.6 |
The tree sequence toolkit. |
2023-10-10 10:59:18 |
| snpio |
1.0.5.2 |
Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment. |
2023-09-17 09:53:05 |
| phylomatcher |
0.3.2 |
A tool for parsing and extracting taxon synonyms. |
2023-05-12 18:25:51 |
| taxomatcher |
0.2 |
A tool for parsing and extracting taxon synonyms. |
2023-05-05 19:26:14 |
| haplopy |
0.1.3 |
Haplotype reconstruction from unphased diplotypes |
2023-05-03 09:42:33 |
| tsinfer |
0.3.1 |
Infer tree sequences from genetic variation data. |
2023-04-19 14:37:37 |
| hapROH |
0.64 |
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel |
2023-04-14 15:28:56 |